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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr017589.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | NF-YB | ||||||||
Protein Properties | Length: 273aa MW: 29360.3 Da PI: 6.4322 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 174.8 | 8.9e-55 | 66 | 162 | 1 | 97 |
NF-YB 1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 vreqdrf+Pianv+rim+k+lP +akis+daket+qecvse+isf+t+ea+++cqre+rkti+++d+lwa+++lGf+dy+epl++yl++yre+ege+ Pbr017589.1 66 VREQDRFMPIANVIRIMRKILPPHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSKLGFDDYIEPLTLYLHRYREMEGER 162 69*********************************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 6.9E-52 | 61 | 174 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 1.71E-38 | 69 | 166 | IPR009072 | Histone-fold |
Pfam | PF00808 | 6.6E-26 | 72 | 136 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 1.6E-16 | 100 | 118 | No hit | No description |
PROSITE pattern | PS00685 | 0 | 103 | 119 | IPR003956 | Transcription factor, NFYB/HAP3, conserved site |
PRINTS | PR00615 | 1.6E-16 | 119 | 137 | No hit | No description |
PRINTS | PR00615 | 1.6E-16 | 138 | 156 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009738 | Biological Process | abscisic acid-activated signaling pathway | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0033613 | Molecular Function | activating transcription factor binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 273 aa Download sequence Send to blast |
MTTPNTTSAS GLKLSDINVR PAEMNQYSMG MGRQTTTTTN VNNVFNNSSS NANTTNGTAD 60 DNECMVREQD RFMPIANVIR IMRKILPPHA KISDDAKETI QECVSEYISF ITGEANERCQ 120 REQRKTITAE DVLWAMSKLG FDDYIEPLTL YLHRYREMEG ERGSSTTSLM RSESLAKGAG 180 TSSGTSSRAI DHHQYYGSSM AAAAAAFHHQ HGHGFFGYMN PSDAWVSNNN VNAASAAAAS 240 GLSTQLQGGG SAAMLNGDHH QLPHANGANG GA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1n1j_A | 3e-40 | 67 | 157 | 3 | 93 | NF-YB |
4awl_B | 3e-40 | 67 | 157 | 4 | 94 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA |
4csr_A | 3e-40 | 67 | 157 | 4 | 94 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009374852.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit B-3 | ||||
Swissprot | Q84W66 | 7e-73 | NFYB6_ARATH; Nuclear transcription factor Y subunit B-6 | ||||
TrEMBL | A0A0B2S6G8 | 4e-80 | A0A0B2S6G8_GLYSO; Nuclear transcription factor Y subunit B-6 | ||||
TrEMBL | B5KMS8 | 4e-80 | B5KMS8_SOYBN; Transcription factor LEC1-A | ||||
STRING | GLYMA07G39820.1 | 1e-79 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2728 | 32 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47670.2 | 1e-69 | nuclear factor Y, subunit B6 |